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Background The western flower thrips, Frankliniella occidentalis (Pergande), is a globally invasive pest and plant virus vector on a wide array of food, fiber and ornamental crops. While there are numerous studies centered on thrips pest and vector biology, feeding behaviors, ecology, and insecticide resistance, the underlying genetic mechanisms of the processes governing these areas of research are largely unknown. To address this gap, we present the F.
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dc.contributor.author | Rotenberg, Dorith | |
dc.contributor.author | Baumann, Aaron A. | |
dc.contributor.author | Ben-Mahmoud, Sulley | |
dc.contributor.author | Christiaens, Olivier | |
dc.contributor.author | Dermauw, Wannes | |
dc.contributor.author | Ioannidis, Panagiotis | |
dc.contributor.author | Jacobs, Chris G. C. | |
dc.contributor.author | Vargas Jentzsch, Iris M. | |
dc.contributor.author | Oliver, Jonathan E. | |
dc.contributor.author | Poelchau, Monica F. | |
dc.contributor.author | Priya Rajarapu, Swapna | |
dc.contributor.author | Schneweis, Derek J. | |
dc.contributor.author | Snoeck, Simon | |
dc.contributor.author | Taning, Clauvis N. T. | |
dc.contributor.author | Wei, Dong | |
dc.contributor.author | Widana Gamage, Shirani M. K. | |
dc.contributor.author | Hughes, Daniel S. T. | |
dc.contributor.author | Murali, Shwetha C. | |
dc.contributor.author | Bailey, Samuel T. | |
dc.contributor.author | Bejerman, Nicolas Esteban | |
dc.contributor.author | Holmes, Christopher J. | |
dc.contributor.author | Jennings, Emily C. | |
dc.contributor.author | Rosendale, Andrew J. | |
dc.contributor.author | Rosselot, Andrew | |
dc.contributor.author | Hervey, Kaylee | |
dc.contributor.author | Schneweis, Brandi A. | |
dc.contributor.author | Cheng, Sammy | |
dc.contributor.author | Childers, Christopher | |
dc.contributor.author | Simão, Felipe A. | |
dc.contributor.author | Dietzgen, Ralf G. | |
dc.contributor.author | Chao, Hsu | |
dc.contributor.author | Dinh, Huyen | |
dc.contributor.author | Vardhan Doddapaneni, Harsha | |
dc.contributor.author | Dugan, Shannon | |
dc.contributor.author | Han, Yi | |
dc.contributor.author | Lee, Sandra L. | |
dc.contributor.author | Muzny, Donna M. | |
dc.contributor.author | Qu, Jiaxin | |
dc.contributor.author | Worley, Kim C. | |
dc.contributor.author | Benoit, Joshua B. | |
dc.contributor.author | Friedrich, Markus | |
dc.contributor.author | Jones, Jeffery W. | |
dc.contributor.author | Panfilio, Kristen A. | |
dc.contributor.author | Park, Yoonseong | |
dc.contributor.author | Robertson, Hugh M. | |
dc.contributor.author | Smagghe, Guy | |
dc.contributor.author | Ullman, Diane E. | |
dc.contributor.author | Van der Zee, Maurijn | |
dc.contributor.author | Van Leeuwen, Thomas | |
dc.contributor.author | Veenstra, Jan A. | |
dc.contributor.author | Waterhouse, Robert M. | |
dc.contributor.author | Weirauch, Matthew T. | |
dc.contributor.author | Werren, John H. | |
dc.contributor.author | Whitfield, Anna E. | |
dc.contributor.author | Zdobnov, Evgeny M. | |
dc.contributor.author | Gibbs, Richard A. | |
dc.contributor.author | Richards, Stephen | |
dc.date.accessioned | 2020-12-28T14:29:20Z | |
dc.date.available | 2020-12-28T14:29:20Z | |
dc.date.issued | 2020-10-19 | |
dc.identifier.issn | 1741-7007 (online) | |
dc.identifier.other | https://doi.org/10.1186/s12915-020-00862-9 | |
dc.identifier.uri | http://hdl.handle.net/20.500.12123/8498 | |
dc.identifier.uri | https://bmcbiol.biomedcentral.com/articles/10.1186/s12915-020-00862-9 | |
dc.description.abstract | Background The western flower thrips, Frankliniella occidentalis (Pergande), is a globally invasive pest and plant virus vector on a wide array of food, fiber and ornamental crops. While there are numerous studies centered on thrips pest and vector biology, feeding behaviors, ecology, and insecticide resistance, the underlying genetic mechanisms of the processes governing these areas of research are largely unknown. To address this gap, we present the F. occidentalis draft genome assembly and official gene set. Results We report on the first genome sequence for any member of the insect order Thysanoptera. Benchmarking Universal Single-Copy Ortholog (BUSCO) assessments of the genome assembly (size = 415.8 Mb, scaffold N50 = 948.9 Kb) revealed a relatively complete and well-annotated assembly in comparison to other insect genomes. The genome is unusually GC-rich (50%) compared to other insect genomes to date. The official gene set (OGS v1.0) contains 16,859 genes, of which ∼10% were manually verified and corrected by our consortium. We focused on manual annotation, phylogenetic and expression evidence analyses for gene sets centered on primary themes in the life histories and activities of plant-colonizing insects. Highlights include: 1) divergent clades and large expansions in genes associated with environmental sensing (chemosensory receptors) and detoxification (CYP4, CYP6 and CCE enzymes) of substances encountered in agricultural environments; 2) a comprehensive set of salivary gland-associated genes supported by enriched expression; 3) apparent absence of members of the IMD innate immune defense pathway; and 4) developmental- and sex-specific expression analyses of genes associated with progression from larvae to adulthood through neometaboly, a distinct form of maturation compared to complete metamorphosis in the Holometabola. | eng |
dc.format | application/pdf | es_AR |
dc.language.iso | eng | es_AR |
dc.publisher | BMC | es_AR |
dc.rights | info:eu-repo/semantics/openAccess | es_AR |
dc.rights.uri | http://creativecommons.org/licenses/by-nc-sa/4.0/ | |
dc.source | BMC Biology 18 (1): 142 (2020) | es_AR |
dc.subject | Thysanoptera | es_AR |
dc.subject | Salivary Glands | eng |
dc.subject | Detoxification | eng |
dc.subject | Glándulas Salivales | |
dc.subject | Desintoxicación | |
dc.subject.other | Western Flower Thrips | eng |
dc.subject.other | Hemipteroid Assemblage | eng |
dc.subject.other | Insect Genomics | eng |
dc.subject.other | Tospovirus | es_AR |
dc.subject.other | Chemosensory Receptors | eng |
dc.subject.other | Opsins | eng |
dc.subject.other | Innate Immunity | eng |
dc.title | Genome-enabled insights into the biology of thrips as crop pests | es_AR |
dc.type | info:ar-repo/semantics/artículo | es_AR |
dc.type | info:eu-repo/semantics/article | es_AR |
dc.type | info:eu-repo/semantics/publishedVersion | es_AR |
dc.rights.license | Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0) | |
dc.description.origen | Instituto de Patología Vegetal | es_AR |
dc.description.fil | Fil: Rotenberg, Dorith. North Carolina State University. Department of Entomology and Plant Pathology; Estados Unidos | es_AR |
dc.description.fil | Fil: Baumann, Aaron A. University of Tennessee. Virology Section, College of Veterinary Medicine; Estados Unidos | es_AR |
dc.description.fil | Fil: Ben-Mahmoud, Sulley. University of California Davis. Department of Entomology and Nematology; Estados Unidos | es_AR |
dc.description.fil | Fil: Christiaens, Olivier. Ghent University. Department of Plants and Crops. Laboratory of Agrozoology; Bélgica | es_AR |
dc.description.fil | Fil: Dermauw, Wannes.Ghent University. Department of Plants and Crops. Laboratory of Agrozoology; Bélgica | es_AR |
dc.description.fil | Fil: Ioannidis, Panagiotis. Foundation for Research and Technology-Hellas. Institute of Molecular Biology and Biotechnology; Grecia. University of Geneva Medical School. Swiss Institute of Bioinformatics. Department of Genetic Medicine and Development; Suiza | es_AR |
dc.description.fil | Fil: Jacobs, Chris G. C. Leiden University. Institute of Biology; Países Bajos | es_AR |
dc.description.fil | Fil: Vargas Jentzsch, Iris M. University of Cologne. Institute for Zoology: Developmental Biology; Alemania | es_AR |
dc.description.fil | Fil: Oliver, Jonathan E. University of Georgia - Tifton Campus. Department of Plant Pathology; Estados Unidos | es_AR |
dc.description.fil | Fil: Poelchau, Monica F. National Agricultural Library. USDA-ARS; Estados Unidos | es_AR |
dc.description.fil | Fil: Priya Rajarapu, Swapna. North Carolina State University. Department of Entomology and Plant Pathology; Estados Unidos | es_AR |
dc.description.fil | Fil: Schneweis, Derek J. Kansas State University. Department of Plant Pathology; Estados Unidos | es_AR |
dc.description.fil | Fil: Snoeck, Simon. University of Washington. Department of Biology; Estados Unidos. Ghent University. Department of Plants and Crops. Laboratory of Agrozoology; Bélgica | es_AR |
dc.description.fil | Fil: Taning, Clauvis N. T. Ghent University. Department of Plants and Crops. Laboratory of Agrozoology; Bélgica | es_AR |
dc.description.fil | Fil: Wei, Dong. Ghent University. Department of Plants and Crops. Laboratory of Agrozoology; Bélgica. Southwest University. College of Plant Protection. Chongqing Key Laboratory of Entomology and Pest Control Engineering; China. Ghent University. Southwest University, Chongqing. Academy of Agricultural Sciences. International Joint Laboratory of China-Belgium on Sustainable Crop Pest; Bélgica | es_AR |
dc.description.fil | Fil: Widana Gamage, Shirani M. K. University of Ruhuna. Department of Botany; Sri Lanka | es_AR |
dc.description.fil | Fil: Hughes, Daniel S. T. Baylor College of Medicine. Department of Human and Molecular Genetics. Human Genome Sequencing Center; Estados Unidos | es_AR |
dc.description.fil | Fil: Murali, Shwetha C. Baylor College of Medicine. Department of Human and Molecular Genetics. Human Genome Sequencing Center; Estados Unidos | es_AR |
dc.description.fil | Fil: Bailey, Samuel T. University of Cincinnati. Department of Biological Sciences; Estados Unidos | es_AR |
dc.description.fil | Fil: Bejerman, Nicolas Esteban. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Patología Vegetal; Argentina. | es_AR |
dc.description.fil | Fil: Holmes, Christopher J. University of Cincinnati. Department of Biological Sciences; Estados Unidos | es_AR |
dc.description.fil | Fil: Jennings, Emily C. University of Cincinnati. Department of Biological Sciences; Estados Unidos | es_AR |
dc.description.fil | Fil: Rosendale, Andrew J. University of Cincinnati. Department of Biological Sciences; Estados Unidos. Mount St. Joseph University.Department of Biology; Estados Unidos | es_AR |
dc.description.fil | Fil: Rosselot, Andrew. University of Cincinnati. Department of Biological Sciences; Estados Unidos | es_AR |
dc.description.fil | Fil: Hervey, Kaylee. Kansas State University. Department of Plant Pathology; Estados Unidos | es_AR |
dc.description.fil | Fil: Schneweis, Brandi A. Kansas State University. Department of Plant Pathology; Estados Unidos | es_AR |
dc.description.fil | Fil: Cheng, Sammy. University of Rochester. Department of Biology; Estados Unidos | es_AR |
dc.description.fil | Fil: Childers, Christopher. National Agricultural Library. USDA-ARS; Estados Unidos | es_AR |
dc.description.fil | Fil: Simão, Felipe A. University of Geneva Medical School. Swiss Institute of Bioinformatics. Department of Genetic Medicine and Development: Suiza | es_AR |
dc.description.fil | Fil: Dietzgen, Ralf G. University of Queensland. Queensland Alliance for Agriculture and Food Innovation; Australia | es_AR |
dc.description.fil | Fil: Chao, Hsu. Baylor College of Medicine. Department of Human and Molecular Genetics. Human Genome Sequencing Center; Estados Unidos | es_AR |
dc.description.fil | Fil: Dinh, Huyen. Baylor College of Medicine. Department of Human and Molecular Genetics. Human Genome Sequencing Center; Estados Unidos | es_AR |
dc.description.fil | Fil: Vardhan Doddapaneni, Harsha. Baylor College of Medicine. Department of Human and Molecular Genetics. Human Genome Sequencing Center; Estados Unidos | es_AR |
dc.description.fil | Fil: Dugan, Shannon. Baylor College of Medicine. Department of Human and Molecular Genetics. Human Genome Sequencing Center; Estados Unidos | es_AR |
dc.description.fil | Fil: Han, Yi. Baylor College of Medicine. Department of Human and Molecular Genetics. Human Genome Sequencing Center; Estados Unidos | es_AR |
dc.description.fil | Fil: Lee, Sandra L. Baylor College of Medicine. Department of Human and Molecular Genetics. Human Genome Sequencing Center; Estados Unidos | es_AR |
dc.description.fil | Fil: Muzny, Donna M. Baylor College of Medicine. Department of Human and Molecular Genetics. Human Genome Sequencing Center; Estados Unidos | es_AR |
dc.description.fil | Fil: Qu, Jiaxin. Baylor College of Medicine. Department of Human and Molecular Genetics. Human Genome Sequencing Center; Estados Unidos | es_AR |
dc.description.fil | Fil: Worley, Kim C. Baylor College of Medicine. Department of Human and Molecular Genetics. Human Genome Sequencing Center; Estados Unidos | es_AR |
dc.description.fil | Fil: Benoit, Joshua B. University of Cincinnati. Department of Biological Sciences; Estados Unidos | es_AR |
dc.description.fil | Fil: Friedrich, Markus. Wayne State University. Department of Biological Sciences; Estados Unidos | es_AR |
dc.description.fil | Fil: Jones, Jeffery W. Wayne State University. Department of Biological Sciences; Estados Unidos | es_AR |
dc.description.fil | Fil: Panfilio, Kristen A. University of Cologne. Institute for Zoology: Developmental Biology; Alemania. University of Warwick. Gibbet Hill Campus. School of Life Sciences; Reino Unido | es_AR |
dc.description.fil | Fil: Park, Yoonseong. Kansas State University. Department of Entomology; Estados Unidos | es_AR |
dc.description.fil | Fil: Robertson, Hugh M. University of Illinois at Urbana-Champaign. Department of Entomology; Estados Unidos | es_AR |
dc.description.fil | Fil: Smagghe, Guy. Ghent University. Department of Plants and Crops. Laboratory of Agrozoology; Bélgica. Southwest University. College of Plant Protection. Chongqing Key Laboratory of Entomology and Pest Control Engineering; China. Chongqing, China and Ghent University. Southwest University. Academy of Agricultural Sciences. International Joint Laboratory of China-Belgium on Sustainable Crop Pest Control; Bélgica | es_AR |
dc.description.fil | Fil: Ullman, Diane E. University of California Davis. Department of Entomology and Nematology; Estados Unidos | es_AR |
dc.description.fil | Fil: Van der Zee, Maurijn. Leiden University. Institute of Biology. Leiden; Países Bajos | es_AR |
dc.description.fil | Fil: Van Leeuwen, Thomas. Ghent University. Department of Plants and Crops. Laboratory of Agrozoology; Bélgica | es_AR |
dc.description.fil | Fil: Veenstra, Jan A. University of Bordeaux; Francia | es_AR |
dc.description.fil | Fil: Waterhouse, Robert M. University of Lausanne. Swiss Institute of Bioinformatics. Department of Ecology and Evolution; Suiza | es_AR |
dc.description.fil | Fil: Weirauch, Matthew T. Cincinnati Children’s Hospital Medical Center. Center for Autoimmune Genomics and Etiology. Divisions of Biomedical Informatics and Developmental Biology; Estados Unidos. University of Cincinnati. College of Medicine. Department of Pediatrics; Estados Unidos | es_AR |
dc.description.fil | Fil: Werren, John H. University of Rochester. Department of Biology; Estados Unidos | es_AR |
dc.description.fil | Fil: Whitfield, Anna E. North Carolina State University. Department of Entomology and Plant Pathology; Estados Unidos | es_AR |
dc.description.fil | Fil: Zdobnov, Evgeny M. University of Geneva Medical School. Swiss Institute of Bioinformatics. Department of Genetic Medicine and Development; Suiza | es_AR |
dc.description.fil | Fil: Gibbs, Richard A. Baylor College of Medicine. Human Genome Sequencing Center. Department of Human and Molecular Genetics; Estados Unidos | es_AR |
dc.description.fil | Fil: Richards, Stephen. Baylor College of Medicine. Human Genome Sequencing Center. Department of Human and Molecular Genetics; Estados Unidos | es_AR |
dc.subtype | cientifico |
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