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Abstract
Background The western flower thrips, Frankliniella occidentalis (Pergande), is a globally invasive pest and plant virus vector on a wide array of food, fiber and ornamental crops. While there are numerous studies centered on thrips pest and vector biology, feeding behaviors, ecology, and insecticide resistance, the underlying genetic mechanisms of the processes governing these areas of research are largely unknown. To address this gap, we present the F. [ver mas...]
dc.contributor.authorRotenberg, Dorith
dc.contributor.authorBaumann, Aaron A.
dc.contributor.authorBen-Mahmoud, Sulley
dc.contributor.authorChristiaens, Olivier
dc.contributor.authorDermauw, Wannes
dc.contributor.authorIoannidis, Panagiotis
dc.contributor.authorJacobs, Chris G. C.
dc.contributor.authorVargas Jentzsch, Iris M.
dc.contributor.authorOliver, Jonathan E.
dc.contributor.authorPoelchau, Monica F.
dc.contributor.authorPriya Rajarapu, Swapna
dc.contributor.authorSchneweis, Derek J.
dc.contributor.authorSnoeck, Simon
dc.contributor.authorTaning, Clauvis N. T.
dc.contributor.authorWei, Dong
dc.contributor.authorWidana Gamage, Shirani M. K.
dc.contributor.authorHughes, Daniel S. T.
dc.contributor.authorMurali, Shwetha C.
dc.contributor.authorBailey, Samuel T.
dc.contributor.authorBejerman, Nicolas Esteban
dc.contributor.authorHolmes, Christopher J.
dc.contributor.authorJennings, Emily C.
dc.contributor.authorRosendale, Andrew J.
dc.contributor.authorRosselot, Andrew
dc.contributor.authorHervey, Kaylee
dc.contributor.authorSchneweis, Brandi A.
dc.contributor.authorCheng, Sammy
dc.contributor.authorChilders, Christopher
dc.contributor.authorSimão, Felipe A.
dc.contributor.authorDietzgen, Ralf G.
dc.contributor.authorChao, Hsu
dc.contributor.authorDinh, Huyen
dc.contributor.authorVardhan Doddapaneni, Harsha
dc.contributor.authorDugan, Shannon
dc.contributor.authorHan, Yi
dc.contributor.authorLee, Sandra L.
dc.contributor.authorMuzny, Donna M.
dc.contributor.authorQu, Jiaxin
dc.contributor.authorWorley, Kim C.
dc.contributor.authorBenoit, Joshua B.
dc.contributor.authorFriedrich, Markus
dc.contributor.authorJones, Jeffery W.
dc.contributor.authorPanfilio, Kristen A.
dc.contributor.authorPark, Yoonseong
dc.contributor.authorRobertson, Hugh M.
dc.contributor.authorSmagghe, Guy
dc.contributor.authorUllman, Diane E.
dc.contributor.authorVan der Zee, Maurijn
dc.contributor.authorVan Leeuwen, Thomas
dc.contributor.authorVeenstra, Jan A.
dc.contributor.authorWaterhouse, Robert M.
dc.contributor.authorWeirauch, Matthew T.
dc.contributor.authorWerren, John H.
dc.contributor.authorWhitfield, Anna E.
dc.contributor.authorZdobnov, Evgeny M.
dc.contributor.authorGibbs, Richard A.
dc.contributor.authorRichards, Stephen
dc.date.accessioned2020-12-28T14:29:20Z
dc.date.available2020-12-28T14:29:20Z
dc.date.issued2020-10-19
dc.identifier.issn1741-7007 (online)
dc.identifier.otherhttps://doi.org/10.1186/s12915-020-00862-9
dc.identifier.urihttp://hdl.handle.net/20.500.12123/8498
dc.identifier.urihttps://bmcbiol.biomedcentral.com/articles/10.1186/s12915-020-00862-9
dc.description.abstractBackground The western flower thrips, Frankliniella occidentalis (Pergande), is a globally invasive pest and plant virus vector on a wide array of food, fiber and ornamental crops. While there are numerous studies centered on thrips pest and vector biology, feeding behaviors, ecology, and insecticide resistance, the underlying genetic mechanisms of the processes governing these areas of research are largely unknown. To address this gap, we present the F. occidentalis draft genome assembly and official gene set. Results We report on the first genome sequence for any member of the insect order Thysanoptera. Benchmarking Universal Single-Copy Ortholog (BUSCO) assessments of the genome assembly (size = 415.8 Mb, scaffold N50 = 948.9 Kb) revealed a relatively complete and well-annotated assembly in comparison to other insect genomes. The genome is unusually GC-rich (50%) compared to other insect genomes to date. The official gene set (OGS v1.0) contains 16,859 genes, of which ∼10% were manually verified and corrected by our consortium. We focused on manual annotation, phylogenetic and expression evidence analyses for gene sets centered on primary themes in the life histories and activities of plant-colonizing insects. Highlights include: 1) divergent clades and large expansions in genes associated with environmental sensing (chemosensory receptors) and detoxification (CYP4, CYP6 and CCE enzymes) of substances encountered in agricultural environments; 2) a comprehensive set of salivary gland-associated genes supported by enriched expression; 3) apparent absence of members of the IMD innate immune defense pathway; and 4) developmental- and sex-specific expression analyses of genes associated with progression from larvae to adulthood through neometaboly, a distinct form of maturation compared to complete metamorphosis in the Holometabola.eng
dc.formatapplication/pdfes_AR
dc.language.isoenges_AR
dc.publisherBMCes_AR
dc.rightsinfo:eu-repo/semantics/openAccesses_AR
dc.sourceBMC Biology 18 (1): 142 (2020)es_AR
dc.subjectThysanopteraes_AR
dc.subjectSalivary Glandseng
dc.subjectDetoxificationeng
dc.subjectGlándulas Salivales
dc.subjectDesintoxicación
dc.subject.otherWestern Flower Thripseng
dc.subject.otherHemipteroid Assemblageeng
dc.subject.otherInsect Genomicseng
dc.subject.otherTospoviruses_AR
dc.subject.otherChemosensory Receptorseng
dc.subject.otherOpsinseng
dc.subject.otherInnate Immunityeng
dc.titleGenome-enabled insights into the biology of thrips as crop pestses_AR
dc.typeinfo:ar-repo/semantics/artículoes_AR
dc.typeinfo:eu-repo/semantics/articlees_AR
dc.typeinfo:eu-repo/semantics/publishedVersiones_AR
dc.description.origenInstituto de Patología Vegetales_AR
dc.description.filFil: Rotenberg, Dorith. North Carolina State University. Department of Entomology and Plant Pathology; Estados Unidoses_AR
dc.description.filFil: Baumann, Aaron A. University of Tennessee. Virology Section, College of Veterinary Medicine; Estados Unidoses_AR
dc.description.filFil: Ben-Mahmoud, Sulley. University of California Davis. Department of Entomology and Nematology; Estados Unidoses_AR
dc.description.filFil: Christiaens, Olivier. Ghent University. Department of Plants and Crops. Laboratory of Agrozoology; Bélgicaes_AR
dc.description.filFil: Dermauw, Wannes.Ghent University. Department of Plants and Crops. Laboratory of Agrozoology; Bélgicaes_AR
dc.description.filFil: Ioannidis, Panagiotis. Foundation for Research and Technology-Hellas. Institute of Molecular Biology and Biotechnology; Grecia. University of Geneva Medical School. Swiss Institute of Bioinformatics. Department of Genetic Medicine and Development; Suizaes_AR
dc.description.filFil: Jacobs, Chris G. C. Leiden University. Institute of Biology; Países Bajoses_AR
dc.description.filFil: Vargas Jentzsch, Iris M. University of Cologne. Institute for Zoology: Developmental Biology; Alemaniaes_AR
dc.description.filFil: Oliver, Jonathan E. University of Georgia - Tifton Campus. Department of Plant Pathology; Estados Unidoses_AR
dc.description.filFil: Poelchau, Monica F. National Agricultural Library. USDA-ARS; Estados Unidoses_AR
dc.description.filFil: Priya Rajarapu, Swapna. North Carolina State University. Department of Entomology and Plant Pathology; Estados Unidoses_AR
dc.description.filFil: Schneweis, Derek J. Kansas State University. Department of Plant Pathology; Estados Unidoses_AR
dc.description.filFil: Snoeck, Simon. University of Washington. Department of Biology; Estados Unidos. Ghent University. Department of Plants and Crops. Laboratory of Agrozoology; Bélgicaes_AR
dc.description.filFil: Taning, Clauvis N. T. Ghent University. Department of Plants and Crops. Laboratory of Agrozoology; Bélgicaes_AR
dc.description.filFil: Wei, Dong. Ghent University. Department of Plants and Crops. Laboratory of Agrozoology; Bélgica. Southwest University. College of Plant Protection. Chongqing Key Laboratory of Entomology and Pest Control Engineering; China. Ghent University. Southwest University, Chongqing. Academy of Agricultural Sciences. International Joint Laboratory of China-Belgium on Sustainable Crop Pest; Bélgicaes_AR
dc.description.filFil: Widana Gamage, Shirani M. K. University of Ruhuna. Department of Botany; Sri Lankaes_AR
dc.description.filFil: Hughes, Daniel S. T. Baylor College of Medicine. Department of Human and Molecular Genetics. Human Genome Sequencing Center; Estados Unidoses_AR
dc.description.filFil: Murali, Shwetha C. Baylor College of Medicine. Department of Human and Molecular Genetics. Human Genome Sequencing Center; Estados Unidoses_AR
dc.description.filFil: Bailey, Samuel T. University of Cincinnati. Department of Biological Sciences; Estados Unidoses_AR
dc.description.filFil: Bejerman, Nicolas Esteban. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Patología Vegetal; Argentina.es_AR
dc.description.filFil: Holmes, Christopher J. University of Cincinnati. Department of Biological Sciences; Estados Unidoses_AR
dc.description.filFil: Jennings, Emily C. University of Cincinnati. Department of Biological Sciences; Estados Unidoses_AR
dc.description.filFil: Rosendale, Andrew J. University of Cincinnati. Department of Biological Sciences; Estados Unidos. Mount St. Joseph University.Department of Biology; Estados Unidoses_AR
dc.description.filFil: Rosselot, Andrew. University of Cincinnati. Department of Biological Sciences; Estados Unidoses_AR
dc.description.filFil: Hervey, Kaylee. Kansas State University. Department of Plant Pathology; Estados Unidoses_AR
dc.description.filFil: Schneweis, Brandi A. Kansas State University. Department of Plant Pathology; Estados Unidoses_AR
dc.description.filFil: Cheng, Sammy. University of Rochester. Department of Biology; Estados Unidoses_AR
dc.description.filFil: Childers, Christopher. National Agricultural Library. USDA-ARS; Estados Unidoses_AR
dc.description.filFil: Simão, Felipe A. University of Geneva Medical School. Swiss Institute of Bioinformatics. Department of Genetic Medicine and Development: Suizaes_AR
dc.description.filFil: Dietzgen, Ralf G. University of Queensland. Queensland Alliance for Agriculture and Food Innovation; Australiaes_AR
dc.description.filFil: Chao, Hsu. Baylor College of Medicine. Department of Human and Molecular Genetics. Human Genome Sequencing Center; Estados Unidoses_AR
dc.description.filFil: Dinh, Huyen. Baylor College of Medicine. Department of Human and Molecular Genetics. Human Genome Sequencing Center; Estados Unidoses_AR
dc.description.filFil: Vardhan Doddapaneni, Harsha. Baylor College of Medicine. Department of Human and Molecular Genetics. Human Genome Sequencing Center; Estados Unidoses_AR
dc.description.filFil: Dugan, Shannon. Baylor College of Medicine. Department of Human and Molecular Genetics. Human Genome Sequencing Center; Estados Unidoses_AR
dc.description.filFil: Han, Yi. Baylor College of Medicine. Department of Human and Molecular Genetics. Human Genome Sequencing Center; Estados Unidoses_AR
dc.description.filFil: Lee, Sandra L. Baylor College of Medicine. Department of Human and Molecular Genetics. Human Genome Sequencing Center; Estados Unidoses_AR
dc.description.filFil: Muzny, Donna M. Baylor College of Medicine. Department of Human and Molecular Genetics. Human Genome Sequencing Center; Estados Unidoses_AR
dc.description.filFil: Qu, Jiaxin. Baylor College of Medicine. Department of Human and Molecular Genetics. Human Genome Sequencing Center; Estados Unidoses_AR
dc.description.filFil: Worley, Kim C. Baylor College of Medicine. Department of Human and Molecular Genetics. Human Genome Sequencing Center; Estados Unidoses_AR
dc.description.filFil: Benoit, Joshua B. University of Cincinnati. Department of Biological Sciences; Estados Unidoses_AR
dc.description.filFil: Friedrich, Markus. Wayne State University. Department of Biological Sciences; Estados Unidoses_AR
dc.description.filFil: Jones, Jeffery W. Wayne State University. Department of Biological Sciences; Estados Unidoses_AR
dc.description.filFil: Panfilio, Kristen A. University of Cologne. Institute for Zoology: Developmental Biology; Alemania. University of Warwick. Gibbet Hill Campus. School of Life Sciences; Reino Unidoes_AR
dc.description.filFil: Park, Yoonseong. Kansas State University. Department of Entomology; Estados Unidoses_AR
dc.description.filFil: Robertson, Hugh M. University of Illinois at Urbana-Champaign. Department of Entomology; Estados Unidoses_AR
dc.description.filFil: Smagghe, Guy. Ghent University. Department of Plants and Crops. Laboratory of Agrozoology; Bélgica. Southwest University. College of Plant Protection. Chongqing Key Laboratory of Entomology and Pest Control Engineering; China. Chongqing, China and Ghent University. Southwest University. Academy of Agricultural Sciences. International Joint Laboratory of China-Belgium on Sustainable Crop Pest Control; Bélgicaes_AR
dc.description.filFil: Ullman, Diane E. University of California Davis. Department of Entomology and Nematology; Estados Unidoses_AR
dc.description.filFil: Van der Zee, Maurijn. Leiden University. Institute of Biology. Leiden; Países Bajoses_AR
dc.description.filFil: Van Leeuwen, Thomas. Ghent University. Department of Plants and Crops. Laboratory of Agrozoology; Bélgicaes_AR
dc.description.filFil: Veenstra, Jan A. University of Bordeaux; Franciaes_AR
dc.description.filFil: Waterhouse, Robert M. University of Lausanne. Swiss Institute of Bioinformatics. Department of Ecology and Evolution; Suizaes_AR
dc.description.filFil: Weirauch, Matthew T. Cincinnati Children’s Hospital Medical Center. Center for Autoimmune Genomics and Etiology. Divisions of Biomedical Informatics and Developmental Biology; Estados Unidos. University of Cincinnati. College of Medicine. Department of Pediatrics; Estados Unidoses_AR
dc.description.filFil: Werren, John H. University of Rochester. Department of Biology; Estados Unidoses_AR
dc.description.filFil: Whitfield, Anna E. North Carolina State University. Department of Entomology and Plant Pathology; Estados Unidoses_AR
dc.description.filFil: Zdobnov, Evgeny M. University of Geneva Medical School. Swiss Institute of Bioinformatics. Department of Genetic Medicine and Development; Suizaes_AR
dc.description.filFil: Gibbs, Richard A. Baylor College of Medicine. Human Genome Sequencing Center. Department of Human and Molecular Genetics; Estados Unidoses_AR
dc.description.filFil: Richards, Stephen. Baylor College of Medicine. Human Genome Sequencing Center. Department of Human and Molecular Genetics; Estados Unidoses_AR
dc.subtypecientifico


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