Now showing items 1-18 of 18

    • ATGC transcriptomics : a web-based application to integrate, explore and analyze de novo transcriptomic data 

      Gonzalez, Sergio Alberto; Clavijo, Bernardo; Rivarola, Maximo Lisandro; Moreno, Patricio; Fernández, Paula; Dopazo, Joaquín; Paniego, Norma Beatriz (2017-02-22)
      Background: In the last years, applications based on massively parallelized RNA sequencing (RNA-seq) have become valuable approaches for studying non-model species, e.g., without a fully sequenced genome. RNA-seq is a ...
    • De novo assembly and characterization of leaf transcriptome for the development of functional molecular markers of the extremophile multipurpose tree species Prosopis alba 

      Torales, Susana Leonor; Rivarola, Maximo Lisandro; Pomponio, Maria Florencia; Gonzalez, Sergio Alberto; Acuña, Cintia Vanesa; Fernandez, Paula Del Carmen; Lopez Lauenstein, Diego; Verga, Anibal; Hopp, Horacio Esteban; Paniego, Norma Beatriz; Marcucci Poltri, Susana Noemi (2013-10)
      Background: Prosopis alba (Fabaceae) is an important native tree adapted to arid and semiarid regions of north-western Argentina which is of great value as multipurpose species. Despite its importance, the genomic resources ...
    • De novo transcriptome sequencing and SSR markers development for Cedrela balansae C.DC., a native tree species of northwest Argentina 

      Torales, Susana Leonor; Rivarola, Maximo Lisandro; Gonzalez, Sergio Alberto; Inza, Maria Virginia; Pomponio, Maria Florencia; Fernandez, Paula Del Carmen; Acuña, Cintia Vanesa; Zelener, Noga; Fornes, Luis Fernando; Hopp, Horacio Esteban; Paniego, Norma Beatriz; Marcucci Poltri, Susana Noemi (Plos One, 2018-12)
      The endangered Cedrela balansae C.DC. (Meliaceae) is a high-value timber species with great potential for forest plantations that inhabits the tropical forests in Northwestern Argentina.Research on this species is scarce ...
    • Development, characterization and experimental validation of a cultivated sunflower (Helianthus annuus L.) gene expression oligonucleotide microarray 

      Fernandez, Paula Del Carmen; Soria, Marcelo Abel; Blesa, David; Di Rienzo, Julio A.; Moschen, Sebastian Nicolas; Rivarola, Maximo Lisandro; Clavijo, Bernardo; Gonzalez, Sergio; Peluffo, Lucila; Principi, Dario; Dosio, Guillermo; Aguirrezabal, Luis; García-García, Francisco; Conesa, Ana; Hopp, Horacio Esteban; Dopazo, Joaquín; Heinz, Ruth Amelia; Paniego, Norma Beatriz (PLOS One, 2012-10)
      Oligonucleotide-based microarrays with accurate gene coverage represent a key strategy for transcriptional studies in orphan species such as sunflower, H. annuus L., which lacks full genome sequences. The goal of this study ...
    • Draft genome sequence data of Cercospora kikuchii, a causal agent of Cercospora leaf blight and purple seed stain of soybeans 

      Sautua, Francisco José; Gonzalez, Sergio Alberto; Doyle, Vinson P.; Berretta, Marcelo Facundo; Gordó, Manuela; Scandiani, Mercedes M.; Rivarola, Maximo Lisandro; Fernandez, Paula Del Carmen; Carmona, Marcelo Anibal (Elsevier, 2019-10)
      Cercospora kikuchii (Tak. Matsumoto & Tomoy.) M.W. Gardner 1927 is an ascomycete fungal pathogen that causes Cercospora leaf blight and purple seed stain on soybean. Here, we report the first draft genome sequence and ...
    • Draft Genome Sequence of Cellulolytic and Xylanolytic Cellulomonas sp. Strain B6 Isolated from Subtropical Forest Soil 

      Piccinni, Florencia Elizabeth; Murua, Yanina; Ghio, Silvina; Talia, Paola Mónica; Rivarola, Maximo Lisandro; Campos, Eleonora (2016-08)
      The genome information will be useful for studies of microbial enzymes for industrial application in lignocellulosic biomass utilization.
    • Exploring gene networks in two sunflower lines with contrasting leaf senescence phenotype using a system biology approach 

      Moschen, Sebastian; Marino, Johanna; Nicosia, Salvador; Higgins, Janet; Alseekh, Saleh; Astigueta, Francisco; Bengoa Luoni, Sofia Ailin; Rivarola, Maximo Lisandro; Fernie, Alisdair R.; Blanchet, Nicolas; Langlade, Nicolas B.; Paniego, Norma Beatriz; Fernandez, Paula Del Carmen; Heinz, Ruth Amelia (BMC, 2019-10)
      Background: Leaf senescence is a complex process, controlled by multiple genetic and environmental variables. In sunflower, leaf senescence is triggered abruptly following anthesis thereby limiting the capacity of plants ...
    • Exploring sunflower responses to Sclerotinia head rot at early stages of infection using RNA‑seq analysis 

      Fass, Monica Irina; Rivarola, Maximo Lisandro; Ehrenbolger, Guillermo Federico; Maringolo, Carla Andrea; Montecchia, Juan Francisco; Quiroz, Facundo Jose; García‑García, Francisco; Dopazo Blázquez, Joaquín; Hopp, Horacio Esteban; Heinz, Ruth Amelia; Paniego, Norma Beatriz; Lia, Veronica Viviana (Springer Nature, 2020-08)
      Sclerotinia head rot (SHR), caused by the necrotrophic fungus Sclerotinia sclerotiorum, is one of the most devastating sunflower crop diseases. Despite its worldwide occurrence, the genetic determinants of plant resistance ...
    • Genome-wide analysis of the snakin/GASA gene family in solanum tuberosum cv. Kennebec 

      Nahirñak, Vanesa; Rivarola, Maximo Lisandro; Gonzalez De Urreta, Martin Salvador; Paniego, Norma Beatriz; Hopp, Horacio Esteban; Almasia, Natalia Ines; Vazquez Rovere, Cecilia (2016-04)
      Snakin/GASA proteins have been involved in different aspects of plant growth and development although their exact role is still intriguing. All of them maintain 12 cysteines of the C-terminus in highly conserved positions ...
    • Integrating transcriptomic and metabolomic analysis to understand natural leaf senescence in sunflower 

      Moschen, Sebastian; Gonzalez, Sergio Alberto; Rivarola, Maximo Lisandro; Hopp, Horacio Esteban; Paniego, Norma Beatriz; Fernandez, Paula del Carmen; Heinz, Ruth Amelia; Bengoa Luoni, Sofia Ailin; Di Rienzo, Julio A.; Caro, María del Pilar; Tohge, Takayuki; Watanabe, Mutsumi; Hollmann, Julien; García-García, Francisco; Dopazo, Joaquín; Hoefgen, Rainer; Fernie, Alisdair R. (2016)
      Leaf senescence is a complex process, which has dramatic consequences on crop yield. In sunflower, gap between potential and actual yields reveals the economic impact of senescence. Indeed, sunflower plants are incapable ...
    • Integration of transcriptomic and metabolic data reveals hub transcription factors involved in drought stress response in sunflower (Helianthus annuus L.) 

      Moschen, Sebastian Nicolas; Di Rienzo, Julio A.; Higgins, Janet; Tohge, Takayuki; Watanabe, Mutsumi; Gonzalez, Sergio Alberto; Rivarola, Maximo Lisandro; García-García, Francisco; Dopazo, Joaquín; Hopp, Horacio Esteban; Hoefgen, Rainer; Fernie, Alisdair R.; Paniego, Norma Beatriz; Fernandez, Paula Del Carmen; Heinz, Ruth Amelia (2017-07)
      Drought is one of the most important environmental stresses that effects crop productivity in many agricultural regions. Sunflower is tolerant to drought conditions but the mechanisms involved in this tolerance remain ...
    • An integrative analysis of post-translational histone modifications in the marine diatom Phaeodactylum tricornutum 

      Veluchamy, Alaguraj; Rastogi, Achal; Lin, Xin; Lombard, Bérangère; Murik, Omer; Thomas, Yann; Dingli, Florent; Rivarola, Maximo Lisandro; Ott, Sandra; Liu, Xinyue; Sun, Yezhou; Rabinowicz, Pablo D.; McCarthy, James; Allen, Andrew E.; Loew, Damarys; Bowler, Chris; Tirichine, Leïla (BioMed Central, 2015)
      Background: Nucleosomes are the building blocks of chromatin where gene regulation takes place. Chromatin landscapes have been profiled for several species, providing insights into the fundamental mechanisms of ...
    • New insight into the wheat chromosome 4 D structure and virtual gene order, relead by survey pyrosequencing 

      Helguera, Marcelo; Rivarola, Maximo Lisandro; Clavijo, Bernardo; Martis, Mihaela M.; Vanzetti, Leonardo Sebastian; Gonzalez, Sergio Alberto; Garbus, Ingrid; Leroy, Phillippe; Simková, Hana; Valárik, Miroslav; Caccamo, Mario; Dolezel, Jaroslav; Mayer, Klaus F.X.; Feuillet, Catherine; Tranquilli, Gabriela; Paniego, Norma Beatriz; Echenique, Carmen Viviana (2015)
      Survey sequencing of the bread wheat (Triticum aestivum L.) genome (AABBDD) has been approached through different strategies delivering important information. However, the current wheat sequence knowledge is not complete. ...
    • Optimizing ddRADseq in non-model species: a case study in Eucalyptus dunnii maiden 

      Aguirre, Natalia Cristina; Filippi, Carla Valeria; Zaina, Giusi; Rivas, Juan Gabriel; Acuña, Cintia Vanesa; Villalba, Pamela Victoria; Garcia, Martin Nahuel; Gonzalez, Sergio; Rivarola, Maximo Lisandro; Martinez, Maria Carolina; Puebla, Andrea Fabiana; Morgante, Michele; Hopp, Horacio Esteban; Paniego, Norma Beatriz; Marcucci Poltri, Susana Noemi (MDPI, 2019-08)
      Restriction site-associated DNA sequencing (RADseq) and its derived protocols, such as double digest RADseq (ddRADseq), offer a flexible and highly cost-effective strategy for efficient plant genome sampling. This has ...
    • Secretome profile of Cellulomonas sp. B6 growing on lignocellulosic substrates 

      Piccinni, Florencia Elizabeth; Ontañon, Ornella Mailén; Ghio, Silvina; Sauka, Diego Hernan; Talia, Paola Mónica; Rivarola, Maximo Lisandro; Valacco, María Pía; Campos, Eleonora (Wiley; Society for Applied Microbiology, 2018-12)
      Aims: Lignocellulosic biomass deconstruction is a bottleneck for obtaining biofuels and value‐added products. Our main goal was to characterize the secretome of a novel isolate, Cellulomonas sp. B6, when grown on residual ...
    • Snakin-1 affects reactive oxygen species and ascorbic acid levels and hormone balance in potato 

      Nahirñak, Vanesa; Rivarola, Maximo Lisandro; Almasia, Natalia Ines; Barrios Baron, María Pilar; Hopp, Horacio Esteban; Vile, Denis; Paniego, Norma Beatriz; Vazquez Rovere, Cecilia (PLOS, 2019-03-25)
      Snakin-1 is a member of the Solanum tuberosum Snakin/GASA family. We previously demonstrated that Snakin-1 is involved in plant defense to pathogens as well as in plant growth and development, but its mechanism of action ...
    • Transcript and metabolic adjustments triggered by drought in Ilex paraguariensis leaves 

      Acevedo, Raúl Maximiliano; Avico, Edgardo H.; Gonzalez, Sergio Alberto; Rodrigues Salvador, Acácio; Rivarola, Maximo Lisandro; Paniego, Norma Beatriz; Nunes Nesi, Adriano; Ruiz, Oscar Adolfo; Sansberro, Pedro Alfonso (Springer, 2019-08)
      Ilex paraguariensis (yerba mate) is cultivated in the subtropical region of South America, where the occurrence of drought episodes limit yield. To explore the mechanisms that allow I. paraguariensis to overcome dehydration, ...
    • Transcriptome profiling of Diachasmimorpha longicaudata towards useful molecular tools for population management 

      Mannino, María Constanza; Rivarola, Maximo Lisandro; Scannapieco, Alejandra Carla; Gonzalez, Sergio Alberto; Farber, Marisa Diana; Cladera, Jorge Luis; Lanzavecchia, Silvia Beatriz (2016)
      Background: Diachasmimorpha longicaudata (Hymenoptera: Braconidae) is a solitary parasitoid of Tephritidae (Diptera) fruit flies of economic importance currently being mass-reared in bio-factories and successfully used ...