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ddRAD-seq para el análisis de asociación genómico de los principales caracteres agronómicos y calidad organoléptica en melocotonero
Ksouri, Najla; Sanchez, Gerardo; Contreras-Moreira, Bruno; Gogorcena Aoiz, Yolanda (SECH-SEG, 2022-09)Double-digest RAD sequencing (ddRAD-Seq) is a powerful method for SNP discovery at a genome-wide scale. It relies on breaking the genome into a certain size of DNA fragments using two restriction enzymes: i) one common ... -
ddRAD-seq variant calling in peach and the effect of removing PCR duplicates
Ksouri, Najla; Benítez, M; Aballay, Maximiliano Martín; Sanchez, Gerardo; Contreras-Moreira, Bruno; Gogorcena Aoiz, Yolanda (ISHS, 2022)Double digest RAD-seq (ddRAD-seq) is a flexible and cost-effective strategy that has emerged as one of the most popular genotyping approaches in plants. It relies on combining two restriction enzymes for library preparation ... -
K-mer counting and curated libraries drive efficient annotation of repeats in plant genomes
Contreras-Moreira, Bruno; Filippi, Carla Valeria; Naamati, Guy; García Girón, Carlos; Allen, James E.; Flicek, Paul (Wiley, 2021-09)The annotation of repetitive sequences within plant genomes can help in the interpretation of observed phenotypes. Moreover, repeat masking is required for tasks such as whole-genome alignment, promoter analysis, or pangenome ...