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Análisis de redes de coexpresión de la enfermedad cítrica Huanglongbing a partir de estudios de cinética de infección
Machado, Rodrigo; Moschen, Sergio; Gonzalez, Santiago Geronimo; Conti, Gabriela; Di Rienzo, Julio Alejandro; Burdyn, Lourdes; Hopp, Horacio Esteban; Fernandez, Paula Del Carmen (Universidad Nacional del Noroeste de la Provincia de Buenos Aires ( UNNOBA), 2022-10)HuangLongBing (HLB) es la enfermedad más devastadora de los cítricos y hasta el momento no cuenta con un tratamiento efectivo. Es causada por bacterias del género Candidatus Liberibacter spp. Estas bacterias son parásitos ... -
Análisis genómico de girasol: desarrollo de colecciones de ESTs y de una plataforma bioinformática para estudios de expresión de genes candidato en respuestas a estreses abióticos
Fernandez, Paula Del Carmen (Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, 2006)El girasol es uno de los principales cultivos oleaginosos del mundo por su volumen de producción y composición en ácidos grasos insaturados. En promedio, durante los últimos cinco años, la producción mundial se ha mantenido ... -
Aplicación de transcriptómica y metabolómica para la detección de HLB
Machado, Rodrigo; Burdyn, Lourdes; Moschen, Sebastian Nicolas; Fernandez, Paula Del Carmen (EEA Concordia, INTA, 2020)La producción citrícola del NEA peligra frente a la llegada del HLB, cuya bacteria causante describe un comportamiento a veces impredecible en las plantas cítricas afectadas. La aplicación e integración de las ciencias ... -
ATGC transcriptomics : a web-based application to integrate, explore and analyze de novo transcriptomic data
Gonzalez, Sergio Alberto; Clavijo, Bernardo; Rivarola, Maximo Lisandro; Moreno, Patricio; Fernández, Paula; Dopazo, Joaquín; Paniego, Norma Beatriz (2017-02-22)Background: In the last years, applications based on massively parallelized RNA sequencing (RNA-seq) have become valuable approaches for studying non-model species, e.g., without a fully sequenced genome. RNA-seq is a ... -
Cost-Effective Method to Perform SARS-CoV-2 Variant Surveillance: Detection of Alpha, Gamma, Lambda, Delta, Epsilon, and Zeta in Argentina
Torres, Carolina; Mojsiejczuk, Laura; Acuña, Dolores; Alexay, Sofía; Amadio, Ariel; Aulicino, Paula; Debat, Humberto Julio; Fay, Fabián; Fernandez, Franco Daniel; Giri, Adriana A.; Goya, Stephanie; Konig, Guido Alberto; Lucero, Horacio; Nabaes Jodar, Mercedes Soledad; Pianciola, Luis; Sfalcin, Javier A.; Acevedo, Raúl M.; Bengoa Luoni, Sofía Ailin; Bolatti, Elisa M.; Brusés, Bettina; Cacciabue, Marco Polo Domingo; Casal, Pablo E.; Cerri, Agustina; Chouhy, Diego; Dus Santos, Maria Jose; Eberhardt, María Florencia; Fernandez, Ailen; Fernandez, Paula Del Carmen; Fernández Do Porto, Darío; Formichelli, Laura; Gismondi, María Ines; Irazoqui, Jose Matias; Lorenzini Campos, Melina; Lusso, Silvina; Marquez, Nathalie; Muñoz Hidalgo, Marianne Graziel; Mussin, Javier; Natale, Mónica; Oria, Griselda; Pisano, María Belén; Posner, Victoria; Puebla, Andrea Fabiana; Viegas, Mariana (Frontiers Media, 2021-12-10)The emergence of SARS-CoV-2 variants with concerning characteristics to public health has attracted the attention of the scientific community and governments both regionally and globally since the end of 2020. The most ... -
De novo assembly and characterization of leaf transcriptome for the development of functional molecular markers of the extremophile multipurpose tree species Prosopis alba
Torales, Susana Leonor; Rivarola, Maximo Lisandro; Pomponio, Maria Florencia; Gonzalez, Sergio Alberto; Acuña, Cintia Vanesa; Fernandez, Paula Del Carmen; Lopez Lauenstein, Diego; Verga, Anibal; Hopp, Horacio Esteban; Paniego, Norma Beatriz; Marcucci Poltri, Susana Noemi (2013-10)Background: Prosopis alba (Fabaceae) is an important native tree adapted to arid and semiarid regions of north-western Argentina which is of great value as multipurpose species. Despite its importance, the genomic resources ... -
De novo transcriptome sequencing and SSR markers development for Cedrela balansae C.DC., a native tree species of northwest Argentina
Torales, Susana Leonor; Rivarola, Maximo Lisandro; Gonzalez, Sergio Alberto; Inza, Maria Virginia; Pomponio, Maria Florencia; Fernandez, Paula Del Carmen; Acuña, Cintia Vanesa; Zelener, Noga; Fornes, Luis Fernando; Hopp, Horacio Esteban; Paniego, Norma Beatriz; Marcucci Poltri, Susana Noemi (Plos One, 2018-12)The endangered Cedrela balansae C.DC. (Meliaceae) is a high-value timber species with great potential for forest plantations that inhabits the tropical forests in Northwestern Argentina.Research on this species is scarce ... -
Development, characterization and experimental validation of a cultivated sunflower (Helianthus annuus L.) gene expression oligonucleotide microarray
Fernandez, Paula Del Carmen; Soria, Marcelo Abel; Blesa, David; Di Rienzo, Julio A.; Moschen, Sebastian Nicolas; Rivarola, Maximo Lisandro; Clavijo, Bernardo; Gonzalez, Sergio; Peluffo, Lucila; Principi, Dario; Dosio, Guillermo; Aguirrezabal, Luis; García-García, Francisco; Conesa, Ana; Hopp, Horacio Esteban; Dopazo, Joaquín; Heinz, Ruth Amelia; Paniego, Norma Beatriz (PLOS One, 2012-10)Oligonucleotide-based microarrays with accurate gene coverage represent a key strategy for transcriptional studies in orphan species such as sunflower, H. annuus L., which lacks full genome sequences. The goal of this study ... -
Draft genome sequence data of Cercospora kikuchii, a causal agent of Cercospora leaf blight and purple seed stain of soybeans
Sautua, Francisco José; Gonzalez, Sergio Alberto; Doyle, Vinson P.; Berretta, Marcelo Facundo; Gordó, Manuela; Scandiani, María Mercedes; Rivarola, Maximo Lisandro; Fernandez, Paula Del Carmen; Carmona, Marcelo Anibal (Elsevier, 2019-10)Cercospora kikuchii (Tak. Matsumoto & Tomoy.) M.W. Gardner 1927 is an ascomycete fungal pathogen that causes Cercospora leaf blight and purple seed stain on soybean. Here, we report the first draft genome sequence and ... -
Exploring gene networks in two sunflower lines with contrasting leaf senescence phenotype using a system biology approach
Moschen, Sebastian; Marino, Johanna; Nicosia, Salvador; Higgins, Janet; Alseekh, Saleh; Astigueta, Francisco; Bengoa Luoni, Sofia Ailin; Rivarola, Maximo Lisandro; Fernie, Alisdair R.; Blanchet, Nicolas; Langlade, Nicolas B.; Paniego, Norma Beatriz; Fernandez, Paula Del Carmen; Heinz, Ruth Amelia (BMC, 2019-10)Background: Leaf senescence is a complex process, controlled by multiple genetic and environmental variables. In sunflower, leaf senescence is triggered abruptly following anthesis thereby limiting the capacity of plants ... -
Fungicide resistance in Cercospora species causing cercospora leaf blight and purple seed stain of soybean in Argentina
Sautua, Francisco José; Doyle, Vinson P.; Price, Paul P.; Porfiri, Alejandro; Fernandez, Paula Del Carmen; Scandiani, María Mercedes; Carmona, Marcelo Anibal (Wiley, 2020-12)Cercospora species cause cercospora leaf blight (CLB) and purple seed stain (PSS) on soybean. Because there are few resistant soybean varieties available, CLB/PSS management relies heavily upon fungicide applications. ... -
Generación de una herramienta para la búsqueda de metadata asociada a transcriptos
Machado, Rodrigo; Moschen, Sebastian Nicolas; Gonzalez, Sergio Alberto; Conti, Gabriela; Massaro, Mora; Di Rienzo, Julio Alejandro; Burdyn, Lourdes; Hopp, Horacio Esteban; Fernandez, Paula Del Carmen (Sociedad Argentina de Informática (SADIO), 2021-10)Al analizar un transcriptoma en primera instancia se debe realizar un pre-procesamiento computacional de las lecturas de transcriptos generados por secuenciadores masivos y posterior obtención de la expresión diferencial ... -
Genome-wide and comparative phylogenetic analysis of senescence-associated NAC transcription factors in sunflower (Helianthus annuus)
Bengoa Luoni, Sofía Ailin; Cenci, Alberto; Moschen, Sebastian Nicolas; Nicosia, Salvador Maria; Radonic, Laura Mabel; Sabio Y Garcia, Julia Veronica; Langlade, Nicolas B.; Vile, Denis; Vazquez Rovere, Cecilia; Fernandez, Paula Del Carmen (Springer, 2021-12)Background: Leaf senescence delay impacts positively in grain yield by maintaining the photosynthetic area during the reproductive stage and during grain filling. Therefore a comprehensive understanding of the gene families ... -
How temperatures may affect the synthesis of fatty acids during olive fruit ripening: genes at work in the field
Contreras Valentín, Ana Cibeles; Pierantozzi, Pierluigi; Maestri, Damian; Tivani, Martin; Searles, Peter Stoughton; Brizuela, Magdalena; Fernandez, Fabricio; Toro, Alejandro Alberto; Puertas, Carlos Marcelo; Trentacoste, Eduardo Rafael; Kiessling, Juan Roberto; Mariotti, Roberto; Baldoni, Luciana; Mousavi, Soraya; Fernandez, Paula Del Carmen; Moschen, Sebastian Nicolas; Torres, Myriam Mariela (MDPI, 2023-01)A major concern for olive cultivation in many extra-Mediterranean regions is the adaptation of recently introduced cultivars to environmental conditions different from those prevailing in the original area, such as the ... -
Identificación y caracterización funcional de genes candidatos asociados a la senescencia foliar en girasol basado en perfiles transcripcionales y metabólicos
Moschen, Sebastian (Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, 2014)El proceso de senescencia en plantas es un mecanismo complejo controlado por múltiples variables genéticas y ambientales que condicionan el rendimiento de los cultivos. En el caso del girasol, el segundo cultivo oleaginoso ... -
Identification and characterization of contrasting sunflower genotypes to early leaf senescence process combining molecular and physiological studies (Helianthus annuus L.)
López Gialdi, A.I.; Moschen, Sebastian Nicolas; Villán, C.S.; López Fernández, María Paula; Maldonado, Sara Beatriz; Paniego, Norma Beatriz; Heinz, Ruth Amelia; Fernandez, Paula Del Carmen (2016)Leaf senescence is a complex mechanism ruled by multiple genetic and environmental variables that affect crop yields. It is the last stage in leaf development, is characterized by an active decline in photosynthetic rate, ... -
Identification and expression analysis of NAC transcription factors potentially involved in leaf and petal senescence in Petunia hybrida
Trupkin, Santiago Ariel; Astigueta, Francisco H.; Baigorria, Amilcar Hernan; Garcia, Martin Nahuel; Delfosse, Veronica Cecilia; González, Sergio A.; Perez De La Torre, Mariana; Moschen, Sebastian; Lia, Veronica Viviana; Fernandez, Paula Del Carmen; Heinz, Ruth Amelia (Elsevier, 2019-10)Progression of leaf senescence depends on several families of transcription factors. In Arabidopsis, the NAC family plays crucial roles in the modulation of leaf senescence; however, the mechanisms involved in this ... -
Identification of candidate genes associated with leaf senescence in cultivated sunflower (Helianthus annuus L.)
Moschen, Sebastian; Bengoa Luoni, Sofia Ailin; Paniego, Norma Beatriz; Hopp, Horacio Esteban; Dosio, Guillermo Aníbal Adrián; Fernandez, Paula Del Carmen; Heinz, Ruth Amelia (PLOS, 2014)Cultivated sunflower (Helianthus annuus L.), an important source of edible vegetable oil, shows rapid onset of senescence, which limits production by reducing photosynthetic capacity under specific growing conditions. ... -
Integrating transcriptomic and metabolomic analysis to understand natural leaf senescence in sunflower
Moschen, Sebastian; Gonzalez, Sergio Alberto; Rivarola, Maximo Lisandro; Hopp, Horacio Esteban; Paniego, Norma Beatriz; Fernandez, Paula del Carmen; Heinz, Ruth Amelia; Bengoa Luoni, Sofia Ailin; Di Rienzo, Julio A.; Caro, María del Pilar; Tohge, Takayuki; Watanabe, Mutsumi; Hollmann, Julien; García-García, Francisco; Dopazo, Joaquín; Hoefgen, Rainer; Fernie, Alisdair R. (2016)Leaf senescence is a complex process, which has dramatic consequences on crop yield. In sunflower, gap between potential and actual yields reveals the economic impact of senescence. Indeed, sunflower plants are incapable ... -
Integration of transcriptomic and metabolic data reveals hub transcription factors involved in drought stress response in sunflower (Helianthus annuus L.)
Moschen, Sebastian Nicolas; Di Rienzo, Julio A.; Higgins, Janet; Tohge, Takayuki; Watanabe, Mutsumi; Gonzalez, Sergio Alberto; Rivarola, Maximo Lisandro; García-García, Francisco; Dopazo, Joaquín; Hopp, Horacio Esteban; Hoefgen, Rainer; Fernie, Alisdair R.; Paniego, Norma Beatriz; Fernandez, Paula Del Carmen; Heinz, Ruth Amelia (2017-07)Drought is one of the most important environmental stresses that effects crop productivity in many agricultural regions. Sunflower is tolerant to drought conditions but the mechanisms involved in this tolerance remain ...